ssam-spatial-celltyping
Cell segmentation-free spatial cell-type inference using SSAM (Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation). Applies KDE to single-molecule mRNA coordinates and maps pixel-level gene expression vectors to cell-type signatures, producing a spatial cell-type map and abundance statistics.
Based on: External workflow
VERSION 1.0.0
AUTHOR khyeonm
INPUT coordinates.csvsignatures.csv
OUTPUT ssam_result.h5adcelltype_map.pngkde_map.pngcelltype_abundance.csv
FILES
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