Autopipe Hub
Loading pipelines...

scLENS

Data-driven signal detection for unbiased scRNA-seq data analysis using scLENS (Single-cell Low-dimension Embedding using effective Noise Subtraction). Performs QC, dimensionality reduction via RMT-based noise filtering, and UMAP visualization.

Based on: External workflow

GitHub Download ZIP
VERSION 1.0.1
AUTHOR khyeonm
INPUT scRNA-seq count matrix CSV
OUTPUT PCA embedding CSVUMAP embedding CSVAnnData h5ad fileUMAP plot PNG
TOOLS
scLENSJuliaUMAP.jl
TAGS
scRNA-seqdimensionality-reductionsingle-cellUMAPPCAnoise-filtering
FILES

Select a file from the tree to view its contents.

v1.0.1 latest
2026-03-29 ยท khyeonm
v1.0.0 Download ZIP
2026-03-13 ยท khyeonm